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en:research:notebook:start [2018/04/17 09:42] admin |
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| ====== Research notebook ====== | ====== Research notebook ====== | ||
| - | The purpose of this page is to be a sort of research notebook. | + | The purpose of this page is to be a sort of research notebook. I have also created a project at OSF (Open Science Frameworks) site having similar purpose in mind (and to investigate the facilities provided by OSF). Project page [[https://osf.io/|Computational Engineering Notebook]] |
| ==== Questions ==== | ==== Questions ==== | ||
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| * http://www.taverna.org.uk/ Taverna | * http://www.taverna.org.uk/ Taverna | ||
| * http://www.vistrails.org/index.php/Main_Page Vistrails | * http://www.vistrails.org/index.php/Main_Page Vistrails | ||
| + | * http://www.activepapers.org/ | ||
| ==== Books and papers ==== | ==== Books and papers ==== | ||
| Line 50: | Line 51: | ||
| * http://gts.sourceforge.net/samples.html | * http://gts.sourceforge.net/samples.html | ||
| * http://www.aimatshape.net/ontologies/shapes/viewmodels.jsp | * http://www.aimatshape.net/ontologies/shapes/viewmodels.jsp | ||
| + | |||
| + | === Adaptive Hierarchical Mesh Refinement === | ||
| + | * There is [[en:research:notebook:ahmr|separate page]] where I collect references to this topic. | ||
| === Circle packing === | === Circle packing === | ||
| * https://www.nodebox.net/code/index.php/shared_2008-08-07-12-55-33 | * https://www.nodebox.net/code/index.php/shared_2008-08-07-12-55-33 | ||
| - | ==== Porous materials simulations ==== | + | ==== Materials Modeling ==== |
| - | * [[http://dune.mathematik.uni-freiburg.de/ | Dune]] | + | * There is [[en:research:notebook:materials|separate notebook]] where I collect references to material modeling libraries, papers, etc. |
| - | * [[http://www.dumux.org/| DuMux]] | + | |
| - | * [[http://opm-project.org/|The Open Porous Media (OPM) initiative]] | + | |
| ==== Programming ==== | ==== Programming ==== | ||
| Line 63: | Line 66: | ||
| * [[en:research:notebook:cpp|C++ programming]] | * [[en:research:notebook:cpp|C++ programming]] | ||
| * [[en:research:notebook:c|C programming]] | * [[en:research:notebook:c|C programming]] | ||
| + | * [[en:research:notebook:matlab|Matlab programming]] | ||
| * [[en:research:notebook:octave|Octave programming]] | * [[en:research:notebook:octave|Octave programming]] | ||
| * [[en:research:notebook:libraries|C/C++ libraries]] | * [[en:research:notebook:libraries|C/C++ libraries]] | ||
| Line 68: | Line 72: | ||
| * [[en:research:notebook:js|JavaScript programming]] | * [[en:research:notebook:js|JavaScript programming]] | ||
| - | ==== Tex and LaTeX ==== | + | ==== Tex and LaTeX and DocOnce ==== |
| + | |||
| + | === LaTeX === | ||
| * [[en:research:notebook:tex|TeX and LaTeX]] | * [[en:research:notebook:tex|TeX and LaTeX]] | ||
| * https://khan.github.io/KaTeX/ | * https://khan.github.io/KaTeX/ | ||
| + | * CodeCogs on-line equations editor https://www.codecogs.com/eqnedit.php | ||
| + | === DocOnce === | ||
| + | * https://github.com/hplgit/doconce | ||
| + | * http://hplgit.github.io/doconce/doc/pub/tutorial/tutorial.html | ||
| + | |||
| Line 78: | Line 89: | ||
| * [[en:research:notebook:environsetup|Environment setup]] | * [[en:research:notebook:environsetup|Environment setup]] | ||
| * [[en:research:notebook:bashtricks|Bash tricks]] | * [[en:research:notebook:bashtricks|Bash tricks]] | ||
| + | * [[en:research:notebook:sphinxtricks|Documenting with Sphinx]] | ||
| + | * [[en:research:notebook:programming|General programming tips]] | ||
| + | * [[en:research:notebook:how_to_learn|How to learn]] | ||
| ==== Tools ==== | ==== Tools ==== | ||
| + | * [[en:research:notebook:pycharms|PyCharm]] | ||
| + | * [[en:research:notebook:images|Images manipulation]] | ||
| + | * [[en:research:notebook:HDF5|HDF5]] | ||
| * [[en:research:notebook:cmake|CMake]] | * [[en:research:notebook:cmake|CMake]] | ||
| * [[en:research:notebook:sdms|Scientific Data Management Systems]] | * [[en:research:notebook:sdms|Scientific Data Management Systems]] | ||